PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g003370.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 336aa    MW: 36271 Da    PI: 6.3699
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g003370.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.23e-13100150255
                       HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       + +h  +Er+RR+++N+ ++ Lr+l+P     ++k+ + a+i   +v+YI++Lq
  Sopen03g003370.1 100 KISHITVERNRRKQMNEHLSVLRTLMPCF---YAKRGDQASIIGGVVDYINELQ 150
                       56899***********************9...9********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.70498149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.01E-1298154No hitNo description
SuperFamilySSF474591.03E-1699166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-13100161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-10100150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-10104155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010374Biological Processstomatal complex development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MDGDQNLSDL FDDSECDIFG ILEALEGGGG GGGGGNSGIT SKFNNNTNNQ TTTITTTTTT  60
TTSDEITGLV SEEGRKRKLI SQKSTGSSAT LQEEETIENK ISHITVERNR RKQMNEHLSV  120
LRTLMPCFYA KRGDQASIIG GVVDYINELQ QVLQSLEAKK QRKVYSEVLS PRVLPPQLVP  180
ISPRLLTPSP LSPRKPPLSP RMNLPISPRT PQPTSPYKPN ANANANKPLE PSPTTSSNSS  240
IDSHVNNELA ANSKSAIADV EVKFSGANVI LKTVSPRIPG QAVKIIAALE QLALEILHVS  300
ISTIDGTMLN SFTIKIGIEC QLSAEELAHQ IQQTFC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015068041.10.0PREDICTED: transcription factor SPEECHLESS
SwissprotQ700C71e-100SPCH_ARATH; Transcription factor SPEECHLESS
TrEMBLK4BEG40.0K4BEG4_SOLLC; Uncharacterized protein
STRINGSolyc03g007410.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA73572231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53210.17e-81bHLH family protein